PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676711032
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 467aa    MW: 51001 Da    PI: 8.2686
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676711032genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-056686323
               ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
               C+ Cgk F r  nL+ H r H
  676711032 66 CEVCGKGFQRDQNLQLHRRGH 86
               *******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.23E-56386No hitNo description
Gene3DG3DSA:3.30.160.602.5E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.516486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576673.23E-5135160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MTGEVLQTVS SGSGFAPSSS TLDHDESLIN PPLVKKKRNL PGNPDPEAEV IALSPKTLMA  60
TNRFLCEVCG KGFQRDQNLQ LHRRGHNLPW KLKQRTSKEV RKRVYVCPEK TCVHHHSSRA  120
LGDLTGIKKH FCRKHGEKKW TCEKCAKRYA VHSDYKAHSK TCGTREYRCD CGTIFSRRDS  180
FITHRAFCDA LAEETAKINA ASHLNGLSPA GAAGINLNYQ YLMGTLNPPL QPFVPQPPTN  240
QNHHHHFLPP PPSSSSSLSL WMGQDIAAPQ TQQQDYEWVF GNAKAVPAGC IDNNNNNNNH  300
DDLITLTANA SSTTITTTTL SVPSLFSSDQ TQSANANANM SATALLQKAA EIGANSTTAT  360
SNEPSAIFKS FPLKSSDPPN YDSGEKFFAL FGSNNNIGVM SHSHEQDMEN ARNDVTVASA  420
MDELQNYPWK RRKVDGGGEG GGGGQTRDFL GVGVQTLCHP SSINGWI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101734.10.0PREDICTED: zinc finger protein NUTCRACKER
SwissprotQ9FFH30.0IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLM4EY340.0M4EY34_BRARP; Uncharacterized protein
STRINGBra033724.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.10.0C2H2-like zinc finger protein